One thing is want to come up with browser maybe…..

bed file for genome…… showing genes, maybe more.

more blast….

genome against transcritome evalue limit

lets take transcriptome and blast against genome with more stringent evalue and reduce max targets

(ipython)

!blastn -query /Users/sr320/Desktop/QPX_transcriptome_v1.fasta -db /Volumes/Bay3/Software/ncbi-blast-2.2.27\+/db/QPX_v015 -out /Volumes/web/cnidarian/QPX_trans_blastn_genome_v2 -outfmt 6 -evalue 1E-40 -max_target_seqs 20 -num_threads 1 -task blastn